{
  id          = "0001",
  slug        = "ontology-infrastructure",
  description = "Add manifest.ncl and connections.ncl to .ontology/",
  check       = {
    tag         = "NuCmd",
    cmd         = "if ($\"($env.ONTOREF_PROJECT_ROOT)/.ontology/manifest.ncl\" | path exists) and ($\"($env.ONTOREF_PROJECT_ROOT)/.ontology/connections.ncl\" | path exists) { exit 0 } else { exit 1 }",
    expect_exit = 0,
  },
  instructions = "
1. Source env vars if not already set:
   . $(which ontoref) --env-only

2. Copy missing templates (additive — existing files are NOT overwritten):
   test -f .ontology/manifest.ncl || sed 's/{{ project_name }}/{project_name}/g' \\
     \"$ONTOREF_ROOT/templates/ontology/manifest.ncl\" > .ontology/manifest.ncl
   test -f .ontology/connections.ncl || sed 's/{{ project_name }}/{project_name}/g' \\
     \"$ONTOREF_ROOT/templates/ontology/connections.ncl\" > .ontology/connections.ncl

3. Validate both export cleanly:
   nickel export --import-path \"$NICKEL_IMPORT_PATH\" .ontology/manifest.ncl > /dev/null && echo ok
   nickel export --import-path \"$NICKEL_IMPORT_PATH\" .ontology/connections.ncl > /dev/null && echo ok

4. Open manifest.ncl and set repo_kind to the correct value for this project.
",
}